Includes bibliographical references and index.

Modeling, Simulation, and Meaning of Gene Networks. Network Analysis to Interpret Complex Phenotypes / Hong Yu, Jialiang Huang, Wei Zhang, Jing-Dong J Han -- Stochastic Modeling of Gene Regulatory Networks / Tianhai Tian -- Modeling Expression Quantitative Trait Loci in Multiple Populations / Ching-Lin Hsiao, Cathy S J Fann -- Inference of Gene Networks. Transcriptional Network Inference Based on Information Theory / Patrick E Meyer, Catharina Olsen, Gianluca Bontempi -- Elucidation of General and Condition-Dependent Gene Pathways Using Mixture Models and Bayesian Networks / Sandra Rodriguez-Zas, Younhee Ko -- Multiscale Network Reconstruction from Gene Expression Measurements: Correlations, Perturbations, and "Biological Knowledge" / Daniel Remondini, Gastone Castellani -- Gene Regulatory Networks Inference: Combining a Genetic Programming and Filtering Approach / Lijun Qian, Haixin Wang, Xiangfang Li -- Computational Reconstruction of Protein Interaction Networks / Konrad Monks, Irmgard Muhlberger, Andreas Bernthaler, Raul Fechete, Paul Perco, Rudolf Freund, Arno Lukas, Bernd Mayer -- Analysis of Gene Networks. What if the Fit is Unfit? Criteria for Biological Systems Estimation beyond Residual Errors / Eberhard O Voit -- Machine Learning Methods for Identifying Essential Genes and Proteins in Networks / Kitiporn Plaimas, Rainer Konig -- Gene Coexpression Networks for the Analysis of DNA Microarray Data / Matthew T Weirauch -- Correlation Network Analysis and Knowledge Integration / Thomas N Plasterer, Robert Stanley, Erich Gombocz -- Network Screening: A New Method to Identify Active Networks from an Ensemble of Known Networks / Shigeru Saito, Katsuhisa Horimoto -- Community Detection in Biological Networks / Gautam S Thakur -- On Some Inverse Problems in Generating Probabilistic Boolean Networks / Xi Chen, Wai-Ki Ching, Nam-Kiu Tsing -- Boolean Analysis of Gene Expression Datasets / Debashis Sahoo -- Systems Approach to Diseases. Representing Cancer Cell Trajectories in a Phase-Space Diagram: Switching Cellular States by Biological Phase Transitions / Mariano Bizzarri, Alessandro Giuliani -- Protein Network Analysis for Disease Gene Identification and Prioritization / Jing Chen, Anil G Jegga -- Pathways and Networks as Functional Descriptors for Human Disease and Drug Response Endpoints / Yuri Nikolsky, Marina Bessarabova, Eugene Kirillov, Zoltan Dezso, Weiwei Shi, Tatiana Nikolskaya.

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